MLOC_58840 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.2412720.4050870.3562620.367055
LEAShoots from the seedlings (10 cm shoot stage)0.07643840.3767120.7522010.323929
INF1Young developing inflorescences (5mm)0.01873880.022555700.0201312
INF2Developing inflorescences (1-1.5 cm)0.019918500.02344780.0418977
ROORoots from the seedlings (10 cm shoot stage)1.901491.20970.9739171.29133
NODDeveloping tillers at six leaf stage, 3rd internode0.06281470.1931420.006508980.358633
CAR5Developing grain, bracts removed (5 DPA)0.153430.0988690.07030470.111916
CAR15Developing grain, bracts removed (15 DPA)0.06440790.01940620.02299020.105016



CDS Structure of MLOC_58840






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58840.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_58840.1CUST_13899_PI427708080AvailableAvailablecontig_43045 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g36710.1 +2 0.0 640 353/472 (75%) 13104.m03549 protein methyltransferase domain containing protein
TAIR PP10 AT5G40830.2 +2 7e-70 235 158/428 (37%) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:16354611-16355855 REVERSE LENGTH=414