MLOC_58813 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains21.343416.012317.253718.7765
LEAShoots from the seedlings (10 cm shoot stage)19.684215.669312.916114.3625
INF1Young developing inflorescences (5mm)41.618245.743753.495242.8166
INF2Developing inflorescences (1-1.5 cm)39.690445.996338.863850.8868
ROORoots from the seedlings (10 cm shoot stage)16.843912.574313.861817.6498
NODDeveloping tillers at six leaf stage, 3rd internode6.3585610.941220.307345.216
CAR5Developing grain, bracts removed (5 DPA)14.493414.130513.235315.1847
CAR15Developing grain, bracts removed (15 DPA)2.668382.454432.925066.77559



CDS Structure of MLOC_58813






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58813.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK369296NoneNoneNoneNone
MLOC_58813.1CUST_4022_PI427708080AvailableAvailablecontig_43024 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g43420.1 -1 6e-134 392 231/311 (74%) 13103.m04667 protein single-stranded DNA-binding protein, putative, expressed
TAIR PP10 AT1G47720.1 -1 2e-22 96 64/205 (31%) | Symbols: OSB1 | Primosome PriB/single-strand DNA-binding | chr1:17561514-17562859 REVERSE LENGTH=261