MLOC_58812 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains64.420747.090949.760856.2955
LEAShoots from the seedlings (10 cm shoot stage)13.841910.240311.815110.445
INF1Young developing inflorescences (5mm)0.8274481.257460.784770.937865
INF2Developing inflorescences (1-1.5 cm)0.5061280.2425040.4468990.477145
ROORoots from the seedlings (10 cm shoot stage)66.17449.309251.739167.6303
NODDeveloping tillers at six leaf stage, 3rd internode196.245116.746104.972345.994
CAR5Developing grain, bracts removed (5 DPA)1.853070.9642380.3616021.15932
CAR15Developing grain, bracts removed (15 DPA)0.2771330.157760.4794150.742926



CDS Structure of MLOC_58812






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58812.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250333.1NoneNoneNoneNone
MLOC_58812.1CUST_4021_PI427708080AvailableAvailablecontig_43024 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g43410.1 +3 1e-66 215 141/227 (62%) 13103.m04666 protein OsIAA12 - Auxin-responsive Aux/IAA gene family member, expressed
TAIR PP10 AT1G04240.1 +3 9e-40 142 96/206 (47%) | Symbols: SHY2, IAA3 | AUX/IAA transcriptional regulator family protein | chr1:1128564-1129319 REVERSE LENGTH=189