MLOC_58758 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.04648020.7430840.2847740.493782
LEAShoots from the seedlings (10 cm shoot stage)131.35103.486113.73598.5823
INF1Young developing inflorescences (5mm)00.038655700.0406817
INF2Developing inflorescences (1-1.5 cm)0.09751150.06249830.1245420.107615
ROORoots from the seedlings (10 cm shoot stage)0.3333570.1909133.263460.665765
NODDeveloping tillers at six leaf stage, 3rd internode2.184530.3355861.308041.64062
CAR5Developing grain, bracts removed (5 DPA)0.8363250.5214710.2476160.553435
CAR15Developing grain, bracts removed (15 DPA)0.03692570.1626640.05387030.221223



CDS Structure of MLOC_58758






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58758.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252077.1NoneNoneNoneNone
MLOC_58758.2CUST_18177_PI427708080AvailableAvailablecontig_42851 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g52240.1 -3 2e-170 482 239/268 (89%) 13101.m05463 protein chlorophyll A-B binding protein, putative, expressed
TAIR PP10 AT2G34420.1 -3 5e-160 455 230/267 (86%) | Symbols: LHB1B2, LHCB1.5 | photosystem II light harvesting complex gene B1B2 | chr2:14522716-14523513 REVERSE LENGTH=265