MLOC_58756 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains44.669981.168874.443170.0233
LEAShoots from the seedlings (10 cm shoot stage)60.889229.506230.385236.1794
INF1Young developing inflorescences (5mm)43.634338.417435.238732.0288
INF2Developing inflorescences (1-1.5 cm)33.869240.194635.65240.0228
ROORoots from the seedlings (10 cm shoot stage)37.636452.976340.274462.749
NODDeveloping tillers at six leaf stage, 3rd internode50.027549.303933.1447157.597
CAR5Developing grain, bracts removed (5 DPA)41.89139.153742.500139.6046
CAR15Developing grain, bracts removed (15 DPA)23.391920.737419.631146.8266



CDS Structure of MLOC_58756






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58756.5
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK371266NoneNoneNoneNone
MLOC_58756.5CUST_4010_PI427708080AvailableAvailablecontig_42966 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g44890.1 +2 0.0 1656 840/993 (85%) 13106.m04718 protein villin protein, putative, expressed
TAIR PP10 AT4G30160.1 +2 0.0 1261 634/974 (65%) | Symbols: VLN4, ATVLN4 | villin 4 | chr4:14754528-14759511 FORWARD LENGTH=974