MLOC_58726 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains22.51724.192722.010426.0942
LEAShoots from the seedlings (10 cm shoot stage)0.04081250.02384220.02394030.0262879
INF1Young developing inflorescences (5mm)0.1440360.1326570.2103360.157902
INF2Developing inflorescences (1-1.5 cm)0.110524000.138714
ROORoots from the seedlings (10 cm shoot stage)7.8784911.18933.9938912.9598
NODDeveloping tillers at six leaf stage, 3rd internode0.1129960.09808320.03718690.245059
CAR5Developing grain, bracts removed (5 DPA)0.2553860.5357230.5220930.528601
CAR15Developing grain, bracts removed (15 DPA)0.01958820.02264840.01420550.0568069



CDS Structure of MLOC_58726






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58726.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249680.1NoneNoneNoneNone
MLOC_58726.1CUST_4005_PI427708080AvailableAvailablecontig_42927 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g52860.1 +2 0.0 1193 599/867 (69%) 13103.m05766 protein lipoxygenase, putative, expressed
TAIR PP10 AT3G22400.1 +2 0.0 893 453/866 (52%) | Symbols: LOX5 | PLAT/LH2 domain-containing lipoxygenase family protein | chr3:7927011-7931167 FORWARD LENGTH=886