MLOC_58725 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.064655.445394.62365.22643
LEAShoots from the seedlings (10 cm shoot stage)0.8366060.441431.099490.60829
INF1Young developing inflorescences (5mm)1.449730.7456150.5327050.800743
INF2Developing inflorescences (1-1.5 cm)0.7297030.4936460.9482860.803043
ROORoots from the seedlings (10 cm shoot stage)3.17993.473723.467733.60846
NODDeveloping tillers at six leaf stage, 3rd internode0.06586550.03426020.06150640.0989947
CAR5Developing grain, bracts removed (5 DPA)1.749292.143141.385581.85334
CAR15Developing grain, bracts removed (15 DPA)1.106470.6787470.6204082.13396



CDS Structure of MLOC_58725






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58725.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376751NoneNoneNoneNone
MLOC_58725.1CUST_4004_PI427708080AvailableAvailablecontig_42926 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g54210.1 -3 4e-126 382 250/335 (75%) 13101.m05692 protein GATA zinc finger domain containing protein, expressed
TAIR PP10 AT5G25830.1 -3 3e-58 201 149/339 (44%) | Symbols: GATA12 | GATA transcription factor 12 | chr5:9004398-9005502 REVERSE LENGTH=331