MLOC_58711 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.012463.984064.016184.46142
LEAShoots from the seedlings (10 cm shoot stage)2.100461.284291.550681.52141
INF1Young developing inflorescences (5mm)7.196918.213377.707777.37919
INF2Developing inflorescences (1-1.5 cm)7.375096.835676.19078.37987
ROORoots from the seedlings (10 cm shoot stage)4.014623.784053.517235.18117
NODDeveloping tillers at six leaf stage, 3rd internode0.9317540.8886280.8840993.21707
CAR5Developing grain, bracts removed (5 DPA)3.931025.086344.739575.1943
CAR15Developing grain, bracts removed (15 DPA)2.118091.52941.507634.61909



CDS Structure of MLOC_58711






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58711.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376276NoneNoneNoneNone
MLOC_58711.1CUST_4002_PI427708080AvailableAvailablecontig_42909 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g29410.1 -1 2e-99 308 183/399 (46%) 13110.m02516 protein MBTB53 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain
TAIR PP10 AT3G06190.1 -1 5e-63 213 146/371 (39%) | Symbols: ATBPM2, BPM2 | BTB-POZ and MATH domain 2 | chr3:1874577-1876575 REVERSE LENGTH=406