MLOC_58709 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.988789.836979.73828.43159
LEAShoots from the seedlings (10 cm shoot stage)10.99288.999467.011597.91983
INF1Young developing inflorescences (5mm)11.168611.691315.06799.96188
INF2Developing inflorescences (1-1.5 cm)18.336615.211818.382817.9246
ROORoots from the seedlings (10 cm shoot stage)8.4632214.799611.422616.9036
NODDeveloping tillers at six leaf stage, 3rd internode3.628893.696164.5244413.7444
CAR5Developing grain, bracts removed (5 DPA)3.942733.245313.676443.34074
CAR15Developing grain, bracts removed (15 DPA)6.884535.642467.7071814.1316



CDS Structure of MLOC_58709






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58709.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_58709.1CUST_13883_PI427708080AvailableAvailablecontig_42908 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g31900.1 -2 0.0 1205 722/967 (75%) 13104.m03048 protein calmodulin-binding transcription activator 4, putative, expressed
TAIR PP10 AT1G67310.1 -2 5e-174 541 412/1004 (41%) Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains | chr1:25198182-25203126 REVERSE LENGTH=1016