MLOC_58708 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains16.497914.434112.87815.7911
LEAShoots from the seedlings (10 cm shoot stage)8.280166.356219.120556.8334
INF1Young developing inflorescences (5mm)20.287925.140126.669621.955
INF2Developing inflorescences (1-1.5 cm)18.908622.926726.606126.5752
ROORoots from the seedlings (10 cm shoot stage)10.12114.675716.889118.2333
NODDeveloping tillers at six leaf stage, 3rd internode8.313278.0509311.165826.8758
CAR5Developing grain, bracts removed (5 DPA)11.197112.678212.436313.1196
CAR15Developing grain, bracts removed (15 DPA)3.729284.990824.3932411.6444



CDS Structure of MLOC_58708






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58708.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357145NoneNoneNoneNone
MLOC_58708.1CUST_4001_PI427708080AvailableAvailablecontig_42908 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g31910.1 +1 7e-26 105 66/81 (81%) 13104.m03049 protein expressed protein
TAIR PP10 AT5G63480.1 +1 3e-12 66 33/52 (63%) unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:25417317-25418473 FORWARD LENGTH=189