MLOC_58680 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.252077.035795.703435.25491
LEAShoots from the seedlings (10 cm shoot stage)6.143814.364493.205624.18679
INF1Young developing inflorescences (5mm)18.142518.031516.594216.208
INF2Developing inflorescences (1-1.5 cm)23.315122.437319.071225.1188
ROORoots from the seedlings (10 cm shoot stage)1.431134.065382.91384.82195
NODDeveloping tillers at six leaf stage, 3rd internode0.7990511.527831.389694.67322
CAR5Developing grain, bracts removed (5 DPA)11.22359.8334910.7311.2949
CAR15Developing grain, bracts removed (15 DPA)5.230564.802524.3373811.6007



CDS Structure of MLOC_58680






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58680.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376089NoneNoneNoneNone
MLOC_58680.1CUST_3996_PI427708080AvailableAvailablecontig_42881 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g42200.3 +2 0.0 1274 687/876 (78%) 13102.m04667 protein transcription factor-related, putative, expressed
TAIR PP10 AT1G17450.2 +2 1e-153 519 363/936 (39%) B-block binding subunit of TFIIIC | chr1:5988579-5996693 REVERSE LENGTH=1844