MLOC_58642 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.251786.2357.892187.63381
LEAShoots from the seedlings (10 cm shoot stage)4.925496.061429.154375.83355
INF1Young developing inflorescences (5mm)2.533816.460764.049054.55084
INF2Developing inflorescences (1-1.5 cm)6.074876.337417.154938.17156
ROORoots from the seedlings (10 cm shoot stage)14.644811.740518.922916.3312
NODDeveloping tillers at six leaf stage, 3rd internode0.3565630.5502330.4363751.45518
CAR5Developing grain, bracts removed (5 DPA)3.284662.272941.705182.68839
CAR15Developing grain, bracts removed (15 DPA)0.4100450.2777350.2504780.86196



CDS Structure of MLOC_58642






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58642.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372985NoneNoneNoneNone
MLOC_58642.1CUST_18176_PI427708080AvailableAvailablecontig_42851 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g53180.2 +3 0.0 531 260/308 (84%) 13102.m06065 protein 1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed
TAIR PP10 AT1G05010.1 +3 6e-142 413 206/309 (67%) | Symbols: EFE, ACO4, EAT1 | ethylene-forming enzyme | chr1:1431419-1432695 REVERSE LENGTH=323