MLOC_58599 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains385.716282.447277.992313.872
LEAShoots from the seedlings (10 cm shoot stage)334.081340.523332.105282.392
INF1Young developing inflorescences (5mm)255.508297.79327.47247.307
INF2Developing inflorescences (1-1.5 cm)269.441267.134269.098286.943
ROORoots from the seedlings (10 cm shoot stage)452.763344.141352.41413.445
NODDeveloping tillers at six leaf stage, 3rd internode632.132547.825563.2691614.74
CAR5Developing grain, bracts removed (5 DPA)212.141228.15215.588206.054
CAR15Developing grain, bracts removed (15 DPA)175.611157.706152.127369.399



CDS Structure of MLOC_58599






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58599.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251127.1NoneNoneNoneNone
MLOC_58599.1CUST_320_PI427708083AvailableAvailablecontig_42812 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g60410.3 +1 2e-106 311 146/148 (99%) 13101.m06429 protein ubiquitin-conjugating enzyme, putative, expressed
TAIR PP10 AT3G08690.2 +1 1e-102 301 140/148 (95%) | Symbols: UBC11 | ubiquitin-conjugating enzyme 11 | chr3:2641487-2642489 FORWARD LENGTH=148