MLOC_58595 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.8404310.226410.19549.5693
LEAShoots from the seedlings (10 cm shoot stage)5.051227.90287.080315.2184
INF1Young developing inflorescences (5mm)11.620713.689513.540110.3457
INF2Developing inflorescences (1-1.5 cm)6.543347.801078.443657.99663
ROORoots from the seedlings (10 cm shoot stage)8.040199.907079.8822110.7062
NODDeveloping tillers at six leaf stage, 3rd internode4.203934.473168.7268415.8148
CAR5Developing grain, bracts removed (5 DPA)8.9826610.347711.75779.74215
CAR15Developing grain, bracts removed (15 DPA)1.99471.853281.500854.22588



CDS Structure of MLOC_58595






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58595.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK371638NoneNoneNoneNone
MLOC_58595.3CUST_3982_PI427708080AvailableAvailablecontig_42809 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g43480.1 +1 4e-142 412 228/283 (81%) 13102.m04829 protein expressed protein
TAIR PP10 AT5G51170.1 +1 9e-84 262 131/232 (56%) unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0406 (InterPro:IPR019146); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:20793906-20795330 REVERSE LENGTH=285