MLOC_58589 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.1668213.52211.369211.2764
LEAShoots from the seedlings (10 cm shoot stage)9.032844.772444.676255.5374
INF1Young developing inflorescences (5mm)14.086510.996812.385210.3036
INF2Developing inflorescences (1-1.5 cm)13.797415.166912.465415.3842
ROORoots from the seedlings (10 cm shoot stage)2.638678.224055.750789.09617
NODDeveloping tillers at six leaf stage, 3rd internode1.786891.787171.558466.18622
CAR5Developing grain, bracts removed (5 DPA)19.727918.659519.709718.8179
CAR15Developing grain, bracts removed (15 DPA)8.156377.129215.8224116.2145



CDS Structure of MLOC_58589






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58589.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_58589.2CUST_13866_PI427708080AvailableAvailablecontig_42804 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g03230.2 -2 0.0 1283 706/863 (82%) 13107.m00263 protein eukaryotic translation initiation factor 3 subunit C, putative, expressed
TAIR PP10 AT3G56150.2 -2 0.0 959 529/837 (63%) | Symbols: EIF3C | eukaryotic translation initiation factor 3C | chr3:20833790-20836820 REVERSE LENGTH=900