MLOC_58569 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains23.927217.32416.024418.2029
LEAShoots from the seedlings (10 cm shoot stage)10.900311.509316.3699.57918
INF1Young developing inflorescences (5mm)11.937214.556418.604512.3378
INF2Developing inflorescences (1-1.5 cm)26.557117.081621.308723.4661
ROORoots from the seedlings (10 cm shoot stage)49.849121.58526.285627.3731
NODDeveloping tillers at six leaf stage, 3rd internode11.521114.374220.509641.4425
CAR5Developing grain, bracts removed (5 DPA)12.450814.062613.71413.1032
CAR15Developing grain, bracts removed (15 DPA)6.104345.786935.1099913.9503



CDS Structure of MLOC_58569






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58569.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK369275NoneNoneNoneNone
MLOC_58569.1CUST_3977_PI427708080AvailableAvailablecontig_42789 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g24990.2 +3 2e-175 506 242/268 (90%) 13109.m02385 protein CAF1 family ribonuclease containing protein, putative, expressed
TAIR PP10 AT2G32070.1 +3 7e-135 401 183/261 (70%) Polynucleotidyl transferase, ribonuclease H-like superfamily protein | chr2:13640829-13641656 REVERSE LENGTH=275