MLOC_5856 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.132553.038942.887652.30123
LEAShoots from the seedlings (10 cm shoot stage)2.701261.883052.017291.6792
INF1Young developing inflorescences (5mm)3.62533.87954.061762.68556
INF2Developing inflorescences (1-1.5 cm)4.316334.117013.817573.81768
ROORoots from the seedlings (10 cm shoot stage)0.9392092.091412.012581.84566
NODDeveloping tillers at six leaf stage, 3rd internode1.669881.190811.472563.48788
CAR5Developing grain, bracts removed (5 DPA)3.849543.72813.873573.01153
CAR15Developing grain, bracts removed (15 DPA)1.579831.826071.449183.19328



CDS Structure of MLOC_5856






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_5856.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_5856.1CUST_13862_PI427708080AvailableAvailablecontig_136792 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g05640.1 +2 0.0 971 502/673 (75%) 13112.m00568 protein pentatricopeptide containing protein, putative, expressed
TAIR PP10 AT1G22960.1 +2 8e-119 396 238/642 (37%) Pentatricopeptide repeat (PPR) superfamily protein | chr1:8128086-8130242 REVERSE LENGTH=718