MLOC_58525 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.9628520.823917.54817.8548
LEAShoots from the seedlings (10 cm shoot stage)14.26539.84719.9185310.0954
INF1Young developing inflorescences (5mm)56.578255.802350.781246.6784
INF2Developing inflorescences (1-1.5 cm)59.165151.00550.444359.8625
ROORoots from the seedlings (10 cm shoot stage)6.9922716.335912.545218.6685
NODDeveloping tillers at six leaf stage, 3rd internode0.864631.136614.989666.35906
CAR5Developing grain, bracts removed (5 DPA)30.224428.790732.209330.4681
CAR15Developing grain, bracts removed (15 DPA)10.29418.657168.2966421.4604



CDS Structure of MLOC_58525






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58525.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_58525.1CUST_13858_PI427708080AvailableAvailablecontig_42751 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g02810.1 -1 0.0 1281 702/869 (81%) 13109.m00202 protein CCAAT/enhancer-binding protein, putative, expressed
TAIR PP10 AT1G72440.1 -1 0.0 834 464/871 (53%) | Symbols: EDA25, SWA2 | CCAAT-binding factor | chr1:27268325-27273596 REVERSE LENGTH=1043