MLOC_58511 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains18.498318.937818.267219.1072
LEAShoots from the seedlings (10 cm shoot stage)17.21793.91215.674517.49583
INF1Young developing inflorescences (5mm)26.471628.688526.675523.8993
INF2Developing inflorescences (1-1.5 cm)30.809734.893430.427436.6399
ROORoots from the seedlings (10 cm shoot stage)19.361319.832616.44122.2643
NODDeveloping tillers at six leaf stage, 3rd internode24.588936.10742.0971108.778
CAR5Developing grain, bracts removed (5 DPA)31.446431.683431.051131.2845
CAR15Developing grain, bracts removed (15 DPA)6.881695.64836.9182615.9032



CDS Structure of MLOC_58511






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58511.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK369383NoneNoneNoneNone
MLOC_58511.1CUST_3959_PI427708080AvailableAvailablecontig_42736 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g58470.1 +1 0.0 1142 574/678 (85%) 13104.m06141 protein choline transporter-related, putative, expressed
TAIR PP10 AT3G15380.1 +1 0.0 947 469/678 (69%) Plasma-membrane choline transporter family protein | chr3:5193319-5196435 FORWARD LENGTH=700