MLOC_58493 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.253487.54625.79765.47103
LEAShoots from the seedlings (10 cm shoot stage)8.4124612.73711.10398.44835
INF1Young developing inflorescences (5mm)4.177514.292083.987643.24824
INF2Developing inflorescences (1-1.5 cm)2.50852.900072.344622.65759
ROORoots from the seedlings (10 cm shoot stage)43.459563.523737.901864.9576
NODDeveloping tillers at six leaf stage, 3rd internode0.492850.4601980.6406731.5605
CAR5Developing grain, bracts removed (5 DPA)6.805948.182818.086116.81097
CAR15Developing grain, bracts removed (15 DPA)1.656171.694391.312693.43072



CDS Structure of MLOC_58493






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58493.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_58493.2CUST_13851_PI427708080AvailableAvailablecontig_42720 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g30770.1 +3 0.0 1414 772/948 (81%) 13108.m03185 protein ABC transporter, ATP-binding protein, putative, expressed
TAIR PP10 AT3G47780.1 +3 0.0 1019 551/944 (58%) | Symbols: ATATH6, ATH6 | ABC2 homolog 6 | chr3:17624500-17628972 FORWARD LENGTH=935