MLOC_58492 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains30.226941.504538.242638.0909
LEAShoots from the seedlings (10 cm shoot stage)25.387120.815522.916119.7221
INF1Young developing inflorescences (5mm)74.351981.055276.377866.9517
INF2Developing inflorescences (1-1.5 cm)71.015482.545470.825981.1639
ROORoots from the seedlings (10 cm shoot stage)34.475640.268526.788946.1722
NODDeveloping tillers at six leaf stage, 3rd internode15.964722.145723.069769.0666
CAR5Developing grain, bracts removed (5 DPA)48.266444.839746.913244.085
CAR15Developing grain, bracts removed (15 DPA)22.899821.628521.99251.7292



CDS Structure of MLOC_58492






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58492.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_58492.1CUST_13850_PI427708080AvailableAvailablecontig_42715 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g02090.1 -3 0.0 634 420/549 (77%) 13101.m00143 protein expressed protein
TAIR PP10 AT1G26110.1 -3 9e-100 327 251/584 (43%) | Symbols: DCP5 | decapping 5 | chr1:9024616-9027556 REVERSE LENGTH=611