MLOC_58471 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains25.180420.824622.70521.7862
LEAShoots from the seedlings (10 cm shoot stage)18.47568.0934713.0589.981
INF1Young developing inflorescences (5mm)4.906553.370113.551953.48107
INF2Developing inflorescences (1-1.5 cm)13.834312.462916.086815.4065
ROORoots from the seedlings (10 cm shoot stage)18.09216.780918.69417.1618
NODDeveloping tillers at six leaf stage, 3rd internode1.986632.584033.277716.22532
CAR5Developing grain, bracts removed (5 DPA)84.071187.654779.769882.6966
CAR15Developing grain, bracts removed (15 DPA)24.040624.983524.546561.9808



CDS Structure of MLOC_58471






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58471.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354793NoneNoneNoneNone
MLOC_58471.1CUST_3951_PI427708080AvailableAvailablecontig_42694 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g08090.1 +3 0.0 769 397/477 (83%) 13112.m00853 protein amino acid transporter, putative, expressed
TAIR PP10 AT1G77380.1 +3 0.0 644 327/461 (71%) | Symbols: AAP3, ATAAP3 | amino acid permease 3 | chr1:29075201-29077252 REVERSE LENGTH=476