MLOC_58461 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains30.096123.476227.596629.5195
LEAShoots from the seedlings (10 cm shoot stage)9.9643510.825714.519910.8517
INF1Young developing inflorescences (5mm)14.605817.292418.567416.2365
INF2Developing inflorescences (1-1.5 cm)9.6239711.643710.23213.394
ROORoots from the seedlings (10 cm shoot stage)28.913625.532535.753637.2148
NODDeveloping tillers at six leaf stage, 3rd internode6.228014.095865.0561813.8831
CAR5Developing grain, bracts removed (5 DPA)5.737346.073765.549316.6649
CAR15Developing grain, bracts removed (15 DPA)1.203531.005631.526293.27359



CDS Structure of MLOC_58461






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58461.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251204.1NoneNoneNoneNone
MLOC_58461.1CUST_3948_PI427708080AvailableAvailablecontig_42690 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g46000.1 +3 1e-122 358 170/200 (85%) 13105.m04896 protein ras-related protein, putative, expressed
TAIR PP10 AT4G09720.1 +3 2e-102 306 145/200 (73%) | Symbols: ATRABG3A, RABG3A | RAB GTPase homolog G3A | chr4:6133101-6134959 FORWARD LENGTH=206