MLOC_58454 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains222.963220.801187.869225.714
LEAShoots from the seedlings (10 cm shoot stage)155.29398.021578.841100.778
INF1Young developing inflorescences (5mm)306.841289.74322.674272.11
INF2Developing inflorescences (1-1.5 cm)261.582281.882256.829319.116
ROORoots from the seedlings (10 cm shoot stage)198.368242.177278.264327.205
NODDeveloping tillers at six leaf stage, 3rd internode190.117111.3687.203399.825
CAR5Developing grain, bracts removed (5 DPA)148.767162.685148.771166.469
CAR15Developing grain, bracts removed (15 DPA)48.521249.254449.2028118.344



CDS Structure of MLOC_58454






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58454.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252751.1NoneNoneNoneNone
MLOC_58454.1CUST_3946_PI427708080AvailableAvailablecontig_42686 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g48780.1 +2 2e-101 298 149/149 (100%) 13107.m05229 protein OsCam1-2 - Calmodulin, expressed
TAIR PP10 AT3G43810.1 +2 3e-101 296 148/149 (99%) | Symbols: CAM7 | calmodulin 7 | chr3:15664619-15666355 REVERSE LENGTH=149