MLOC_58449 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.467010.9616420.7441630.916791
LEAShoots from the seedlings (10 cm shoot stage)0.04404640.334880.05869910.11132
INF1Young developing inflorescences (5mm)0.02129110.02607490.07754180.044068
INF2Developing inflorescences (1-1.5 cm)000.05241880.0704316
ROORoots from the seedlings (10 cm shoot stage)4.798444.720323.058234.04186
NODDeveloping tillers at six leaf stage, 3rd internode0.7342930.4270980.4486590.882683
CAR5Developing grain, bracts removed (5 DPA)0.4575330.5287330.2991420.41863
CAR15Developing grain, bracts removed (15 DPA)0.03501690.06437290.07422170.179014



CDS Structure of MLOC_58449






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58449.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK358797NoneNoneNoneNone
MLOC_58449.1CUST_3945_PI427708080AvailableAvailablecontig_42682 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g72810.1 -3 0.0 573 316/444 (71%) 13101.m07936 protein secreted glycoprotein, putative, expressed
TAIR PP10 AT1G16905.1 -3 1e-28 119 82/250 (33%) Curculin-like (mannose-binding) lectin family protein | chr1:5782546-5783817 REVERSE LENGTH=423