MLOC_58433 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.864463.381453.014673.88607
LEAShoots from the seedlings (10 cm shoot stage)2.880922.928794.149182.77499
INF1Young developing inflorescences (5mm)4.827353.293074.648853.85496
INF2Developing inflorescences (1-1.5 cm)3.902684.195764.048144.76015
ROORoots from the seedlings (10 cm shoot stage)9.690354.199654.192295.88841
NODDeveloping tillers at six leaf stage, 3rd internode4.472878.914749.859926.8867
CAR5Developing grain, bracts removed (5 DPA)3.981593.66853.074223.74035
CAR15Developing grain, bracts removed (15 DPA)0.8410810.890320.758782.19075



CDS Structure of MLOC_58433






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58433.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_58433.3CUST_13840_PI427708080AvailableAvailablecontig_42659 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g45170.1 -2 3e-66 222 107/116 (92%) 13107.m04759 protein protein phosphatase 2C, putative, expressed
TAIR PP10 AT3G06270.1 -2 3e-74 239 114/163 (70%) Protein phosphatase 2C family protein | chr3:1896763-1897887 FORWARD LENGTH=348