MLOC_58431 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.668966.57096.488565.44851
LEAShoots from the seedlings (10 cm shoot stage)7.395574.894675.30995.01578
INF1Young developing inflorescences (5mm)15.042315.334314.093811.5969
INF2Developing inflorescences (1-1.5 cm)14.547615.83913.537115.4173
ROORoots from the seedlings (10 cm shoot stage)3.387346.777435.013257.05943
NODDeveloping tillers at six leaf stage, 3rd internode4.172455.322365.8566617.8652
CAR5Developing grain, bracts removed (5 DPA)9.92088.343259.887828.46075
CAR15Developing grain, bracts removed (15 DPA)5.669075.005545.1126711.0748



CDS Structure of MLOC_58431






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58431.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_58431.1CUST_13839_PI427708080AvailableAvailablecontig_42659 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g45160.1 +3 0.0 1717 974/1396 (70%) 13107.m04758 protein SAC3/GANP family protein, expressed
TAIR PP10 AT3G06290.1 +3 0.0 816 538/1338 (40%) SAC3/GANP/Nin1/mts3/eIF-3 p25 family | chr3:1899123-1907297 REVERSE LENGTH=1697