MLOC_58390 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.911814.349512.140713.2823
LEAShoots from the seedlings (10 cm shoot stage)15.603813.705513.017112.135
INF1Young developing inflorescences (5mm)27.89328.111326.29523.8613
INF2Developing inflorescences (1-1.5 cm)22.080324.366924.874326.6565
ROORoots from the seedlings (10 cm shoot stage)13.71316.831316.160119.8593
NODDeveloping tillers at six leaf stage, 3rd internode9.7517514.099318.132648.163
CAR5Developing grain, bracts removed (5 DPA)17.814817.202718.460417.7382
CAR15Developing grain, bracts removed (15 DPA)6.510195.939796.2866514.9455



CDS Structure of MLOC_58390






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58390.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250162.1NoneNoneNoneNone
MLOC_58390.1CUST_3934_PI427708080AvailableAvailablecontig_42626 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g56565.1 +2 0.0 1071 569/743 (77%) 13102.m06501 protein endoribonuclease, putative, expressed
TAIR PP10 AT3G04480.1 +2 0.0 722 400/736 (54%) endoribonucleases | chr3:1193988-1197320 REVERSE LENGTH=718