MLOC_58387 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains29.972625.242123.239123.5249
LEAShoots from the seedlings (10 cm shoot stage)16.944819.051815.515912.7442
INF1Young developing inflorescences (5mm)15.801817.47119.304213.9829
INF2Developing inflorescences (1-1.5 cm)17.450220.838427.379621.1371
ROORoots from the seedlings (10 cm shoot stage)32.864429.403637.044530.8382
NODDeveloping tillers at six leaf stage, 3rd internode37.580640.631427.778598.5457
CAR5Developing grain, bracts removed (5 DPA)36.454337.238438.827433.2941
CAR15Developing grain, bracts removed (15 DPA)9.002858.177058.7417220.3301



CDS Structure of MLOC_58387






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58387.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK355916NoneNoneNoneNone
MLOC_58387.1CUST_3933_PI427708080AvailableAvailablecontig_42623 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g01640.1 -2 4e-80 252 141/164 (86%) 13101.m00088 protein Rer1 protein, putative, expressed
TAIR PP10 AT2G21600.1 -2 7e-69 222 125/157 (80%) | Symbols: ATRER1B, RER1B | endoplasmatic reticulum retrieval protein 1B | chr2:9243550-9244579 FORWARD LENGTH=195