MLOC_58377 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains337.808377.401342.675301.045
LEAShoots from the seedlings (10 cm shoot stage)243.243175.316199.77152.421
INF1Young developing inflorescences (5mm)282.844320.162326.828220.176
INF2Developing inflorescences (1-1.5 cm)242.127276.624256.444240.134
ROORoots from the seedlings (10 cm shoot stage)326.305337.966266.506316.68
NODDeveloping tillers at six leaf stage, 3rd internode145.252166.38151.943468.414
CAR5Developing grain, bracts removed (5 DPA)424.385388.847349.41312.627
CAR15Developing grain, bracts removed (15 DPA)264.557256.626250.123503.579



CDS Structure of MLOC_58377






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58377.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354755NoneNoneNoneNone
MLOC_58377.1CUST_3930_PI427708080AvailableAvailablecontig_42607 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g11440.1 -3 0.0 920 468/475 (99%) 13103.m01291 protein protein transport protein Sec61 subunit alpha, putative, expressed
TAIR PP10 AT2G34250.2 -3 0.0 872 438/475 (92%) SecY protein transport family protein | chr2:14462635-14464572 FORWARD LENGTH=475