MLOC_58337 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.124710.782111.168511.8658
LEAShoots from the seedlings (10 cm shoot stage)5.719023.201033.829973.75581
INF1Young developing inflorescences (5mm)18.952220.62718.601817.8583
INF2Developing inflorescences (1-1.5 cm)17.917517.661117.656721.2453
ROORoots from the seedlings (10 cm shoot stage)10.238410.707913.063613.7
NODDeveloping tillers at six leaf stage, 3rd internode4.418493.343377.0870214.625
CAR5Developing grain, bracts removed (5 DPA)6.741667.040166.898827.73053
CAR15Developing grain, bracts removed (15 DPA)1.51981.205031.335163.53779



CDS Structure of MLOC_58337






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58337.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376741NoneNoneNoneNone
MLOC_58337.1CUST_18170_PI427708080AvailableAvailablecontig_42574 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g17294.2 +1 2e-114 348 169/191 (88%) 13108.m01848 protein PSF3 - Putative GINS complex subunit, expressed
TAIR PP10 AT3G55490.1 +1 3e-67 223 110/184 (60%) GINS complex protein | chr3:20572171-20573415 REVERSE LENGTH=185