MLOC_58321 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.08426190.2400050.2017690.294681
LEAShoots from the seedlings (10 cm shoot stage)0.0787634000.0214611
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0.10293600.02555020.0492501
ROORoots from the seedlings (10 cm shoot stage)00.051784300.0828982
NODDeveloping tillers at six leaf stage, 3rd internode0.01789110.017844300.0557382
CAR5Developing grain, bracts removed (5 DPA)00.042705900.030563
CAR15Developing grain, bracts removed (15 DPA)0.1482860.35260.1097960.765335



CDS Structure of MLOC_58321






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58321.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_58321.3CUST_8023_PI427708083AvailableAvailablecontig_42559 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g07840.1 +3 2e-61 215 153/391 (39%) 13112.m00821 protein dehydration response related protein, putative, expressed
TAIR PP10 AT5G64030.1 +3 3e-30 124 99/326 (30%) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:25624965-25628257 FORWARD LENGTH=829