MLOC_58319 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.539459.427848.3623811.6844
LEAShoots from the seedlings (10 cm shoot stage)8.117976.806796.159587.12882
INF1Young developing inflorescences (5mm)13.687614.705715.981215.7072
INF2Developing inflorescences (1-1.5 cm)19.17218.223319.125326.5002
ROORoots from the seedlings (10 cm shoot stage)4.611137.631577.1553912.7955
NODDeveloping tillers at six leaf stage, 3rd internode5.391456.28296.5946726.5618
CAR5Developing grain, bracts removed (5 DPA)11.59911.529111.89115.6099
CAR15Developing grain, bracts removed (15 DPA)4.067623.565994.4535511.5514



CDS Structure of MLOC_58319






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58319.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK356452NoneNoneNoneNone
MLOC_58319.1CUST_3924_PI427708080AvailableAvailablecontig_42555 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g08080.1 -2 0.0 679 413/583 (71%) 13108.m00832 protein BUD13, putative, expressed
TAIR PP10 AT1G31870.2 -2 4e-128 397 288/587 (49%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2050, pre-mRNA-splicing factor (InterPro:IPR018609); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:11437269-11439821 FORWARD LENGTH=561