- Predicted Gene MLOC_58319
MLOC_58319 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_58319_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 7.53945 | 9.42784 | 8.36238 | 11.6844 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 8.11797 | 6.80679 | 6.15958 | 7.12882 |
INF1 | Young developing inflorescences (5mm) | 13.6876 | 14.7057 | 15.9812 | 15.7072 |
INF2 | Developing inflorescences (1-1.5 cm) | 19.172 | 18.2233 | 19.1253 | 26.5002 |
ROO | Roots from the seedlings (10 cm shoot stage) | 4.61113 | 7.63157 | 7.15539 | 12.7955 |
NOD | Developing tillers at six leaf stage, 3rd internode | 5.39145 | 6.2829 | 6.59467 | 26.5618 |
CAR5 | Developing grain, bracts removed (5 DPA) | 11.599 | 11.5291 | 11.891 | 15.6099 |
CAR15 | Developing grain, bracts removed (15 DPA) | 4.06762 | 3.56599 | 4.45355 | 11.5514 |
CDS Structure of MLOC_58319
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_58319.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
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Rice PP6 |
LOC_Os08g08080.1 |
-2 |
0.0 |
679 |
413/583 (71%) |
13108.m00832 protein BUD13, putative, expressed |
TAIR PP10 |
AT1G31870.2 |
-2 |
4e-128 |
397 |
288/587 (49%) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2050, pre-mRNA-splicing factor (InterPro:IPR018609); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr1:11437269-11439821 FORWARD LENGTH=561 |