MLOC_58281 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains48.735944.956643.460950.5232
LEAShoots from the seedlings (10 cm shoot stage)33.06133.029330.420829.5313
INF1Young developing inflorescences (5mm)75.908478.989470.884268.5518
INF2Developing inflorescences (1-1.5 cm)75.326263.514458.755778.0341
ROORoots from the seedlings (10 cm shoot stage)31.714441.712440.933553.5245
NODDeveloping tillers at six leaf stage, 3rd internode17.052613.813621.634352.5077
CAR5Developing grain, bracts removed (5 DPA)44.081245.600145.314248.2539
CAR15Developing grain, bracts removed (15 DPA)19.85922.164417.552251.033



CDS Structure of MLOC_58281






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58281.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK364819NoneNoneNoneNone
MLOC_58281.1CUST_3916_PI427708080AvailableAvailablecontig_42519 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g18720.1 +2 2e-108 320 193/230 (84%) 13103.m02241 protein RNA recognition motif containing protein, putative, expressed
TAIR PP10 AT2G30260.1 +2 7e-81 248 148/232 (64%) | Symbols: U2B | U2 small nuclear ribonucleoprotein B | chr2:12905557-12907434 REVERSE LENGTH=232