MLOC_5828 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.8453950.5303330.3464320.522409
LEAShoots from the seedlings (10 cm shoot stage)0.8153390.2466970.4830610.415329
INF1Young developing inflorescences (5mm)000.0626960.0496149
INF2Developing inflorescences (1-1.5 cm)0.4347440.1596820.5748310.385336
ROORoots from the seedlings (10 cm shoot stage)2.119981.537291.763561.57277
NODDeveloping tillers at six leaf stage, 3rd internode1.808943.943464.454099.79483
CAR5Developing grain, bracts removed (5 DPA)3.470343.549232.66973.00916
CAR15Developing grain, bracts removed (15 DPA)7.216417.171449.7812518.6267



CDS Structure of MLOC_5828






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_5828.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_5828.2CUST_8015_PI427708083AvailableAvailablecontig_136752 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g37470.1 -3 3e-83 248 120/135 (89%) 13105.m03906 protein transmembrane amino acid transporter protein, putative, expressed
TAIR PP10 AT2G38120.1 -3 1e-79 242 116/135 (86%) | Symbols: AUX1, WAV5, PIR1, MAP1 | Transmembrane amino acid transporter family protein | chr2:15973493-15976792 FORWARD LENGTH=485