MLOC_58279 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains28.601148.96547.788347.1014
LEAShoots from the seedlings (10 cm shoot stage)45.924945.578550.327341.7829
INF1Young developing inflorescences (5mm)58.932154.86961.990552.6921
INF2Developing inflorescences (1-1.5 cm)69.326263.709464.897176.8463
ROORoots from the seedlings (10 cm shoot stage)24.861348.322740.347956.9523
NODDeveloping tillers at six leaf stage, 3rd internode39.558637.452638.5524133.455
CAR5Developing grain, bracts removed (5 DPA)74.616672.410370.3475.8541
CAR15Developing grain, bracts removed (15 DPA)25.352323.541324.169462.1461



CDS Structure of MLOC_58279






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58279.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK353855NoneNoneNoneNone
MLOC_58279.3CUST_3915_PI427708080AvailableAvailablecontig_42515 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g68320.2 -2 0.0 766 395/433 (91%) 13101.m07437 protein DEAD-box ATP-dependent RNA helicase 30, putative, expressed
TAIR PP10 AT5G63120.2 -2 0.0 644 337/432 (78%) P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:25318967-25322071 REVERSE LENGTH=591