- Predicted Gene MLOC_58279
MLOC_58279 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 28.6011 | 48.965 | 47.7883 | 47.1014 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 45.9249 | 45.5785 | 50.3273 | 41.7829 |
INF1 | Young developing inflorescences (5mm) | 58.9321 | 54.869 | 61.9905 | 52.6921 |
INF2 | Developing inflorescences (1-1.5 cm) | 69.3262 | 63.7094 | 64.8971 | 76.8463 |
ROO | Roots from the seedlings (10 cm shoot stage) | 24.8613 | 48.3227 | 40.3479 | 56.9523 |
NOD | Developing tillers at six leaf stage, 3rd internode | 39.5586 | 37.4526 | 38.5524 | 133.455 |
CAR5 | Developing grain, bracts removed (5 DPA) | 74.6166 | 72.4103 | 70.34 | 75.8541 |
CAR15 | Developing grain, bracts removed (15 DPA) | 25.3523 | 23.5413 | 24.1694 | 62.1461 |
CDS Structure of MLOC_58279
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_58279.3
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os01g68320.2 |
-2 |
0.0 |
766 |
395/433 (91%) |
13101.m07437 protein DEAD-box ATP-dependent RNA helicase 30, putative, expressed |
TAIR PP10 |
AT5G63120.2 |
-2 |
0.0 |
644 |
337/432 (78%) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:25318967-25322071 REVERSE LENGTH=591 |