MLOC_58276 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.1037620.07654560.141179
LEAShoots from the seedlings (10 cm shoot stage)0.089293300.1324810.110679
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0.04508980.04260350.02998770.0498402
ROORoots from the seedlings (10 cm shoot stage)0.2720040.08820240.08324840.157861
NODDeveloping tillers at six leaf stage, 3rd internode0.3179070.35330701.55806
CAR5Developing grain, bracts removed (5 DPA)3.075381.974951.568212.30152
CAR15Developing grain, bracts removed (15 DPA)000.0391080.0589967



CDS Structure of MLOC_58276






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58276.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_58276.1CUST_13816_PI427708080AvailableAvailablecontig_42512 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g54160.2 +3 3e-91 288 212/398 (53%) 13102.m12340 protein AP2 domain containing protein, expressed
TAIR PP10 AT3G14230.3 +3 5e-27 112 94/232 (41%) | Symbols: RAP2.2 | related to AP2 2 | chr3:4737616-4739000 REVERSE LENGTH=374