MLOC_58272 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)00.075825300.139588
ROORoots from the seedlings (10 cm shoot stage)0.0627081000.0327537
NODDeveloping tillers at six leaf stage, 3rd internode000.01990220.0435705
CAR5Developing grain, bracts removed (5 DPA)0.09457460.05887180.03338390.0659217
CAR15Developing grain, bracts removed (15 DPA)115.372129.048116.559305.519



CDS Structure of MLOC_58272






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58272.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_58272.1CUST_13814_PI427708080AvailableAvailablecontig_42507 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g29840.1 -1 3e-73 238 122/199 (61%) 13101.m03094 protein no apical meristem protein, putative, expressed
TAIR PP10 AT5G07680.1 -1 1e-71 233 113/179 (63%) | Symbols: ANAC080, ANAC079, ATNAC4, NAC080 | NAC domain containing protein 80 | chr5:2436092-2437322 FORWARD LENGTH=329