MLOC_58254 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.523473.838484.962095.25094
LEAShoots from the seedlings (10 cm shoot stage)4.309043.437784.607413.50495
INF1Young developing inflorescences (5mm)3.8695.656515.473784.41056
INF2Developing inflorescences (1-1.5 cm)4.873194.725595.561625.77892
ROORoots from the seedlings (10 cm shoot stage)8.873354.553045.72496.66882
NODDeveloping tillers at six leaf stage, 3rd internode5.510527.6754212.175524.8312
CAR5Developing grain, bracts removed (5 DPA)2.741522.990483.248473.13748
CAR15Developing grain, bracts removed (15 DPA)0.5956531.329220.8961972.41602



CDS Structure of MLOC_58254






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58254.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK371818NoneNoneNoneNone
MLOC_58254.1CUST_13512_PI427708083AvailableAvailablecontig_42487 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g23590.3 -1 2e-27 112 51/101 (50%) 13101.m02493 protein suppressor of Mek, putative, expressed
TAIR PP10 AT3G06670.1 -1 6e-25 107 50/100 (50%) binding | chr3:2105908-2113136 REVERSE LENGTH=865