MLOC_58253 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.088263.341633.665723.52305
LEAShoots from the seedlings (10 cm shoot stage)3.988314.113974.215033.60772
INF1Young developing inflorescences (5mm)6.492447.820278.707596.62256
INF2Developing inflorescences (1-1.5 cm)8.790298.290277.855529.36268
ROORoots from the seedlings (10 cm shoot stage)2.75353.191733.185173.93218
NODDeveloping tillers at six leaf stage, 3rd internode1.900922.82343.648319.46681
CAR5Developing grain, bracts removed (5 DPA)5.088955.871046.05485.76936
CAR15Developing grain, bracts removed (15 DPA)2.34452.34822.729775.75207



CDS Structure of MLOC_58253






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58253.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250146.1NoneNoneNoneNone
MLOC_58253.2CUST_3910_PI427708080AvailableAvailablecontig_42487 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g04640.1 +3 5e-154 465 255/333 (77%) 13106.m00425 protein bromodomain domain containing protein, expressed
TAIR PP10 AT2G34900.1 +3 2e-76 258 163/358 (46%) | Symbols: GTE01, IMB1, GTE1 | Transcription factor GTE6 | chr2:14723333-14725562 REVERSE LENGTH=386