- Predicted Gene MLOC_58250
MLOC_58250 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_58250_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 11.323 | 19.806 | 18.1199 | 23.4204 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 24.6388 | 20.4662 | 16.0732 | 21.9013 |
INF1 | Young developing inflorescences (5mm) | 46.4192 | 47.6984 | 50.2623 | 48.9077 |
INF2 | Developing inflorescences (1-1.5 cm) | 73.6217 | 64.9823 | 60.0743 | 90.9686 |
ROO | Roots from the seedlings (10 cm shoot stage) | 8.13251 | 8.65093 | 7.99442 | 15.9465 |
NOD | Developing tillers at six leaf stage, 3rd internode | 11.5474 | 14.5433 | 14.1761 | 68.4701 |
CAR5 | Developing grain, bracts removed (5 DPA) | 28.6619 | 29.2974 | 27.3254 | 36.6741 |
CAR15 | Developing grain, bracts removed (15 DPA) | 17.6852 | 17.1729 | 14.7787 | 47.6617 |
CDS Structure of MLOC_58250
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_58250.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os04g51960.1 |
-1 |
2e-41 |
163 |
195/513 (38%) |
13104.m05317 protein expressed protein |
TAIR PP10 |
AT3G49601.1 |
-1 |
1e-18 |
91 |
75/170 (44%) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf21 (InterPro:IPR013170); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:18387504-18389279 REVERSE LENGTH=591 |