MLOC_58250 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.32319.80618.119923.4204
LEAShoots from the seedlings (10 cm shoot stage)24.638820.466216.073221.9013
INF1Young developing inflorescences (5mm)46.419247.698450.262348.9077
INF2Developing inflorescences (1-1.5 cm)73.621764.982360.074390.9686
ROORoots from the seedlings (10 cm shoot stage)8.132518.650937.9944215.9465
NODDeveloping tillers at six leaf stage, 3rd internode11.547414.543314.176168.4701
CAR5Developing grain, bracts removed (5 DPA)28.661929.297427.325436.6741
CAR15Developing grain, bracts removed (15 DPA)17.685217.172914.778747.6617



CDS Structure of MLOC_58250






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58250.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK356595NoneNoneNoneNone
AK368454NoneNoneNoneNone
MLOC_58250.1CUST_3909_PI427708080AvailableAvailablecontig_42482 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g51960.1 -1 2e-41 163 195/513 (38%) 13104.m05317 protein expressed protein
TAIR PP10 AT3G49601.1 -1 1e-18 91 75/170 (44%) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf21 (InterPro:IPR013170); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:18387504-18389279 REVERSE LENGTH=591