MLOC_58213 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.552121.370271.816891.44759
LEAShoots from the seedlings (10 cm shoot stage)1.843890.2593971.066210.90729
INF1Young developing inflorescences (5mm)0.1221550.065627500.0885067
INF2Developing inflorescences (1-1.5 cm)0.05567170.07893830.07014780.0768624
ROORoots from the seedlings (10 cm shoot stage)0.8811670.4664980.6255160.613281
NODDeveloping tillers at six leaf stage, 3rd internode5.186743.056820.06388038.05009
CAR5Developing grain, bracts removed (5 DPA)0.505260.3771340.6989570.502447
CAR15Developing grain, bracts removed (15 DPA)0.3051470.2661020.04442440.558524



CDS Structure of MLOC_58213






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58213.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248420.1NoneNoneNoneNone
MLOC_58213.2CUST_18168_PI427708080AvailableAvailablecontig_42446 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g10604.1 -3 0.0 600 327/412 (79%) 13108.m01134 protein pectinesterase, putative, expressed
TAIR PP10 AT1G05310.1 -3 9e-151 441 217/337 (64%) Pectin lyase-like superfamily protein | chr1:1550615-1552434 REVERSE LENGTH=393