MLOC_58202 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.166980.8664220.8954381.08403
LEAShoots from the seedlings (10 cm shoot stage)0.8386980.6768720.252550.536237
INF1Young developing inflorescences (5mm)0.7090861.433831.139741.08974
INF2Developing inflorescences (1-1.5 cm)2.166362.798432.449673.12415
ROORoots from the seedlings (10 cm shoot stage)0.5771540.7753911.163911.13027
NODDeveloping tillers at six leaf stage, 3rd internode0.8530091.034350.6185363.4628
CAR5Developing grain, bracts removed (5 DPA)2.660043.758132.61543.51674
CAR15Developing grain, bracts removed (15 DPA)0.0749990.1247440.08236420.269581



CDS Structure of MLOC_58202






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58202.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK371879NoneNoneNoneNone
MLOC_58202.1CUST_18167_PI427708080AvailableAvailablecontig_42446 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g09390.1 -2 4e-101 315 171/284 (60%) 13108.m00991 protein OsFBX264 - F-box domain containing protein
TAIR PP10 AT4G05460.1 -2 8e-32 126 97/308 (31%) RNI-like superfamily protein | chr4:2761106-2762400 REVERSE LENGTH=302