MLOC_58183 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.721611.551910.465814.571
LEAShoots from the seedlings (10 cm shoot stage)14.342912.640611.485313.5101
INF1Young developing inflorescences (5mm)39.660242.421642.087443.754
INF2Developing inflorescences (1-1.5 cm)64.824268.392257.57985.4717
ROORoots from the seedlings (10 cm shoot stage)9.3823413.68418.5915221.5799
NODDeveloping tillers at six leaf stage, 3rd internode8.5277716.98313.417568.4849
CAR5Developing grain, bracts removed (5 DPA)34.183130.720430.990438.0009
CAR15Developing grain, bracts removed (15 DPA)23.165119.851523.205960.264



CDS Structure of MLOC_58183






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58183.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_58183.2NoneAvailableAvailablecontig_42426 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g05880.1 +3 9e-118 395 275/700 (39%) 13102.m00649 protein RNA polymerase Rpb1, domain 2 family protein, expressed
TAIR PP10 AT2G40030.1 +3 1e-40 162 153/558 (27%) | Symbols: NRPD1B, DRD3, ATNRPD1B, DMS5, NRPE1 | nuclear RNA polymerase D1B | chr2:16715089-16723406 FORWARD LENGTH=1976