MLOC_58177 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.04491270.05895430.0498344
LEAShoots from the seedlings (10 cm shoot stage)2.206292.984184.565722.33296
INF1Young developing inflorescences (5mm)00.039617400.0352295
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)00.05346300.191371
NODDeveloping tillers at six leaf stage, 3rd internode0.11773200.02373340.0229274
CAR5Developing grain, bracts removed (5 DPA)0.0434331000.0399345
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_58177






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58177.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_58177.1CUST_8002_PI427708083AvailableAvailablecontig_42417 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g03280.1 -2 1e-55 141 97/174 (56%) 13103.m00308 protein TKL_IRAK_CrRLK1L-1.6 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed
TAIR PP10 AT3G46290.1 -1 1e-16 56 34/89 (38%) | Symbols: HERK1 | hercules receptor kinase 1 | chr3:17013009-17015501 FORWARD LENGTH=830