- Predicted Gene MLOC_58173
MLOC_58173 FPKM values
| FPKM by Treatment | FPKM by Replicate |

| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 1.77861 | 1.12502 | 1.3428 | 1.38354 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 0.522085 | 0.627508 | 0.529416 | 0.479072 |
| INF1 | Young developing inflorescences (5mm) | 0.644529 | 0.48265 | 0.727222 | 0.518886 |
| INF2 | Developing inflorescences (1-1.5 cm) | 0.452643 | 0.321178 | 0.304868 | 0.396812 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 1.97287 | 1.03969 | 2.29987 | 1.60808 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 0.276386 | 0.291438 | 1.08209 | 1.45741 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 0.283967 | 0.268752 | 0.217256 | 0.252925 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 0.0883763 | 0.0808247 | 0.128485 | 0.221458 |
CDS Structure of MLOC_58173
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_58173.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os10g40390.1 |
+2 |
1e-130 |
416 |
215/298 (72%) |
13110.m03740 protein scarecrow, putative |
| TAIR PP10 |
AT4G00150.1 |
+2 |
7e-73 |
253 |
142/328 (43%) |
| Symbols: HAM3, ATHAM3, LOM3 | GRAS family transcription factor | chr4:57429-59105 REVERSE LENGTH=558 |