MLOC_58173 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.778611.125021.34281.38354
LEAShoots from the seedlings (10 cm shoot stage)0.5220850.6275080.5294160.479072
INF1Young developing inflorescences (5mm)0.6445290.482650.7272220.518886
INF2Developing inflorescences (1-1.5 cm)0.4526430.3211780.3048680.396812
ROORoots from the seedlings (10 cm shoot stage)1.972871.039692.299871.60808
NODDeveloping tillers at six leaf stage, 3rd internode0.2763860.2914381.082091.45741
CAR5Developing grain, bracts removed (5 DPA)0.2839670.2687520.2172560.252925
CAR15Developing grain, bracts removed (15 DPA)0.08837630.08082470.1284850.221458



CDS Structure of MLOC_58173






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58173.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_58173.1CUST_12817_PI427708083AvailableAvailablecontig_42417 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g40390.1 +2 1e-130 416 215/298 (72%) 13110.m03740 protein scarecrow, putative
TAIR PP10 AT4G00150.1 +2 7e-73 253 142/328 (43%) | Symbols: HAM3, ATHAM3, LOM3 | GRAS family transcription factor | chr4:57429-59105 REVERSE LENGTH=558