MLOC_58166 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.23175.172215.519585.33057
LEAShoots from the seedlings (10 cm shoot stage)2.330922.537943.010652.10762
INF1Young developing inflorescences (5mm)7.979368.883326.917676.44871
INF2Developing inflorescences (1-1.5 cm)5.633247.138545.466656.64417
ROORoots from the seedlings (10 cm shoot stage)2.71425.254373.791955.31375
NODDeveloping tillers at six leaf stage, 3rd internode1.416931.781921.597775.54748
CAR5Developing grain, bracts removed (5 DPA)4.031734.966795.301724.50537
CAR15Developing grain, bracts removed (15 DPA)0.826770.8638131.162822.01893



CDS Structure of MLOC_58166






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58166.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK369297NoneNoneNoneNone
MLOC_58166.2CUST_3896_PI427708080AvailableAvailablecontig_42410 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g20430.1 -3 3e-138 408 192/246 (78%) 13109.m01936 protein SCO1 protein homolog, mitochondrial precursor, putative, expressed
TAIR PP10 AT4G39740.1 -3 5e-75 243 116/225 (52%) Thioredoxin superfamily protein | chr4:18435586-18437095 REVERSE LENGTH=276