MLOC_58152 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.36558800.587991
LEAShoots from the seedlings (10 cm shoot stage)1.960252.045523.529553.15473
INF1Young developing inflorescences (5mm)0.3543830.71731300.776712
INF2Developing inflorescences (1-1.5 cm)0.8662920.2613100.919388
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0.3055130.18596400.976507
CAR5Developing grain, bracts removed (5 DPA)0.382584000.544621
CAR15Developing grain, bracts removed (15 DPA)0.33293800.50481.51177



CDS Structure of MLOC_58152






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58152.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_58152.1NoneAvailableAvailablecontig_423922 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g07170.1 -3 1e-27 105 50/82 (61%) 13112.m00748 protein transposon protein, putative, Pong sub-class
TAIR PP10 AT2G13770.1 -3 2e-25 98 46/77 (60%) CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); Has 451 Blast hits to 352 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 8; Plants - 388; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). | chr2:5736603-5737847 FORWARD LENGTH=343