MLOC_58108 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)00.1236310.2161770.197668
INF1Young developing inflorescences (5mm)0.020049400.02684640.0377422
INF2Developing inflorescences (1-1.5 cm)0.1993070.2218110.6561430.381387
ROORoots from the seedlings (10 cm shoot stage)0.04457520.04861170.07183210.0847002
NODDeveloping tillers at six leaf stage, 3rd internode0.01985350.04642620.02101830.152728
CAR5Developing grain, bracts removed (5 DPA)1.100861.37841.397841.42397
CAR15Developing grain, bracts removed (15 DPA)0.4550840.8861620.4781921.55905



CDS Structure of MLOC_58108






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58108.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376469NoneNoneNoneNone
MLOC_58108.2CUST_3886_PI427708080AvailableAvailablecontig_42354 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g26130.1 -3 0.0 791 399/490 (81%) 13110.m02218 protein phenylalanyl-tRNA synthetase, putative, expressed
TAIR PP10 AT4G39280.1 -3 0.0 598 308/489 (63%) phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative | chr4:18281641-18284831 REVERSE LENGTH=485