MLOC_58106 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.732896.196574.396615.2379
LEAShoots from the seedlings (10 cm shoot stage)20.554529.804634.476224.4833
INF1Young developing inflorescences (5mm)5.299366.490034.958874.87207
INF2Developing inflorescences (1-1.5 cm)4.131214.972094.18694.96126
ROORoots from the seedlings (10 cm shoot stage)2.740944.344445.102195.26228
NODDeveloping tillers at six leaf stage, 3rd internode7.3162910.552613.374638.0459
CAR5Developing grain, bracts removed (5 DPA)4.414164.970855.084414.74662
CAR15Developing grain, bracts removed (15 DPA)0.7790760.9356810.3490821.80179



CDS Structure of MLOC_58106






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_58106.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK365934NoneNoneNoneNone
MLOC_58106.2CUST_3885_PI427708080AvailableAvailablecontig_42354 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g52420.1 +3 4e-177 508 269/337 (80%) 13102.m05975 protein peptidase, M24 family protein, putative, expressed
TAIR PP10 AT4G37040.1 +3 5e-157 455 233/313 (74%) | Symbols: MAP1D | methionine aminopeptidase 1D | chr4:17455175-17457085 FORWARD LENGTH=350